Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZFX

Cell type

Cell type Class
Neural
Cell type
Daoy
Primary Tissue
Brain: Cerebellum
Tissue Diagnosis
Medulloblastoma

Attributes by original data submitter

Sample

source_name
DAOY cells
cell type
medulloblastoma cell line
cell line
DAOY
chip antibody
ZFX

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
27481338
Reads aligned (%)
89.1
Duplicates removed (%)
6.3
Number of peaks
3179 (qval < 1E-05)

hg38

Number of total reads
27481338
Reads aligned (%)
91.3
Duplicates removed (%)
4.8
Number of peaks
3414 (qval < 1E-05)

Base call quality data from DBCLS SRA