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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: E9.5 embryos
ATCC
MeSH
RIKEN BRC
SRX2529642
GSM2470660: E95 WT input rep2; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Embryo
Cell type
E9.5 embryos
NA
NA
Attributes by original data submitter
Sample
source_name
E9.5 full embryo
strain
Bl6
tissue
full embryo
age
E9.5
genotype
WT
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing was performed on multiplexed samples using 50 bp single-end reads on an Illumina HiSeq system according to the manufacturer’s specifications. The libraries were prepared with the NEXTflex ChIP-Seq Kit (Bioo Scientific).
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
74478610
Reads aligned (%)
88.3
Duplicates removed (%)
31.7
Number of peaks
841 (qval < 1E-05)
mm9
Number of total reads
74478610
Reads aligned (%)
88.1
Duplicates removed (%)
31.7
Number of peaks
921 (qval < 1E-05)
Base call quality data from
DBCLS SRA