SRX2529639
GSM2470657: E85 WT H3K27ac rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryo
Cell type
E8.5 embryos
NA
NA

Attributes by original data submitter

Sample

source_name
E8.5 full embryo
strain
Bl6
tissue
full embryo
age
E8.5
genotype
WT

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing was performed on multiplexed samples using 42 bp paired-end reads on an Illumina NextSeq according to the manufacturer’s specifications. The libraries were prepared with the MicroPlex Library Preparation kit (Diagenode)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
46474477
Reads aligned (%)
98.7
Duplicates removed (%)
6.5
Number of peaks
10268 (qval < 1E-05)

mm9

Number of total reads
46474477
Reads aligned (%)
98.7
Duplicates removed (%)
6.6
Number of peaks
10221 (qval < 1E-05)

Base call quality data from DBCLS SRA