Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Digestive tract
Cell type
Stomach
MeSH Description
An organ of digestion situated in the left upper quadrant of the abdomen between the termination of the ESOPHAGUS and the beginning of the DUODENUM.

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
University of Washington, Congenital Defects Lab. Ian Glass
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Fetal Stomach
TISSUE_DEPOT
UW
COLLECTION_METHOD
fetal
DONOR_ID
H-24776
DONOR_AGE
day 96
DONOR_HEALTH_STATUS
NA
DONOR_SEX
Female
DONOR_ETHNICITY
NA
sample_term_id
UBERON_0000945

Sequenced DNA Library

library_name
Histone.DS22597
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
35288627
Reads aligned (%)
88.8
Duplicates removed (%)
3.4
Number of peaks
13617 (qval < 1E-05)

hg19

Number of total reads
35288627
Reads aligned (%)
88.4
Duplicates removed (%)
3.9
Number of peaks
13291 (qval < 1E-05)

Base call quality data from DBCLS SRA