Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived endodermal cells
NA
NA

Attributes by original data submitter

Sample

source_name
Definitive Endoderm
cell type
ES_derived Definitive Endoderm
strain
129/Sv//EV
day of differentiation
Day 5
chip antibody
Nil

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
30983410
Reads aligned (%)
98.0
Duplicates removed (%)
8.2
Number of peaks
184 (qval < 1E-05)

mm9

Number of total reads
30983410
Reads aligned (%)
97.8
Duplicates removed (%)
9.1
Number of peaks
169 (qval < 1E-05)

Base call quality data from DBCLS SRA