Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2AK119ub

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
reprogramming cells
cell type
reprogramming cells
treatment
none
antibody
H2AK119ub(CST,#8240)
day of reprogramming
day 14

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. The ChIP DNA library for NEXT Seq500 sequencing was constructed using VAHTS Turbo DNA Library Prep Kit for Illumina(Vazyme Biotech) according to the manufacturer's instruction. Briefly, 10ng ChIP DNA was end repaired and a dA was added. Then the DNA was ligated with adaptors. Adaptor-ligated DNA was purified using AMPure XP beads. The purified DNA was amplified by PCR for 15 cycles, followed by size selection using two round AMPure XP beads and eluted in 25 ul water. The library was quantified with VAHTS Library Quantification Kit for Illumina(Vazyme Biotech). The DNA was diluted to 10 nM before sequencing.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
15422841
Reads aligned (%)
92.5
Duplicates removed (%)
11.5
Number of peaks
13424 (qval < 1E-05)

mm9

Number of total reads
15422841
Reads aligned (%)
92.3
Duplicates removed (%)
11.8
Number of peaks
13426 (qval < 1E-05)

Base call quality data from DBCLS SRA