SRX252293
GSM1101726: ChIP H3K4me1 C2C12 6hDelta repl1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Muscle
Cell type
C2C12
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
NOS

Attributes by original data submitter

Sample

GEO Accession
GSM1101726
cell line
C2C12
cell type
Mouse myoblast cell line (established from thigh muscle from an adult C3H strain female)
technique
ChIP-sequencing
chip antibody
anti-H3K4me1
chip antibody vendor
Diagenode

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
58042551
Reads aligned (%)
93.4
Duplicates removed (%)
13.8
Number of peaks
611 (qval < 1E-05)

mm9

Number of total reads
58042551
Reads aligned (%)
93.2
Duplicates removed (%)
13.8
Number of peaks
690 (qval < 1E-05)

Base call quality data from DBCLS SRA