SRX2511286
GSM2465690: IgG ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic kidney
NA
NA

Attributes by original data submitter

Sample

source_name
developing kidneys
strain
CFW
developing stage
E16.5
antibody
rabbit IgG
genotype
wild-type

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Qiagen MinElute PCR Purification kit (#28004) Rubicon ThruPlex genomic DNA library kit (#R400429)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
40383871
Reads aligned (%)
95.3
Duplicates removed (%)
89.7
Number of peaks
188 (qval < 1E-05)

mm9

Number of total reads
40383871
Reads aligned (%)
95.1
Duplicates removed (%)
89.8
Number of peaks
199 (qval < 1E-05)

Base call quality data from DBCLS SRA