Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Muscle
Cell type
C2C12
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
NOS

Attributes by original data submitter

Sample

source_name
C2C12 myoblasts
cell line
C2C12
cell type
myoblasts
antibody
H3K27ac (Abcam ab4729)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatins from myoblasts and myotubes were isolated and sonicated to 100-300nt for immunoprecipitation with antibodies ChIP-seq libraries were constructed closely according to the standard illumina pair-end ChIP-seq procedure After the attachment of anchor sequences, fragments were PCR-amplified using Illumina primers.

Sequencing Platform

instrument_model
Illumina HiSeq 1500

mm10

Number of total reads
17085933
Reads aligned (%)
82.2
Duplicates removed (%)
10.5
Number of peaks
16712 (qval < 1E-05)

mm9

Number of total reads
17085933
Reads aligned (%)
82.2
Duplicates removed (%)
10.5
Number of peaks
16699 (qval < 1E-05)

Base call quality data from DBCLS SRA