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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Top2b
wikigenes
PDBj
CellType: Cerebellar granule neurons
ATCC
MeSH
RIKEN BRC
SRX2500402
GSM2460982: CGN Chd7 KO Top2b; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Top2b
Cell type
Cell type Class
Neural
Cell type
Cerebellar granule neurons
NA
NA
Attributes by original data submitter
Sample
source_name
Cerebellar granule neuron
strain
C57BL/6
developmental stage
P7
tissue
granule neuron
antibody
Top2b (Santa Cruz)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed with formadehyde. Lysates were sonicated and precipitated with antibody.
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
37894489
Reads aligned (%)
98.6
Duplicates removed (%)
16.6
Number of peaks
256 (qval < 1E-05)
mm9
Number of total reads
37894489
Reads aligned (%)
98.5
Duplicates removed (%)
16.5
Number of peaks
238 (qval < 1E-05)
Base call quality data from
DBCLS SRA