Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cardiovascular
Cell type
Cardiomyocytes
NA
NA

Attributes by original data submitter

Sample

source_name
cardiomyocyte
strain
C57BL/6J
chip antibody
none
genotype
G9a flox/flox; alphaMHC-MerCreMer +/-

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed as described elsewhere (Peters AH, et al. (2003) Mol Cell 12(6):1577–1589). The Libraries were generated using NuGEN Ovation Ultralow System V2 1–96 kit. ChIP-seq libraries were produced from as little as 1 ng of double-stranded DNA. The workflow consisted of three steps: end repair to generate blunt ends, adaptor ligation with optional multiplexing and PCR amplification to produce the final library.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
21002264
Reads aligned (%)
95.6
Duplicates removed (%)
6.2
Number of peaks
214 (qval < 1E-05)

mm9

Number of total reads
21002264
Reads aligned (%)
95.5
Duplicates removed (%)
6.1
Number of peaks
182 (qval < 1E-05)

Base call quality data from DBCLS SRA