SRX2495305
GSM2459948: O-GlcNAc ChIP-1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Digestive tract
Cell type
Colorectal adenocarcinoma
NA
NA

Attributes by original data submitter

Sample

source_name
colon tumor cells
cell type
colorectal adenocarcinoma
derivation
Isolated from primary tumor
chip antibodies
O-GlcNAc: RL2, ab2739,Abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26606446
Reads aligned (%)
93.1
Duplicates removed (%)
19.8
Number of peaks
845 (qval < 1E-05)

hg19

Number of total reads
26606446
Reads aligned (%)
92.3
Duplicates removed (%)
21.0
Number of peaks
926 (qval < 1E-05)

Base call quality data from DBCLS SRA