SRX248913
GSM1097822: IgG ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
E14 cells_IgG_IP
cell type
E14 murine embryonic stem cells
antibody
anti-Rabbit IgG antibody (sc-2027, Santa Cruz)
background strain
C57BL/6

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
8540618
Reads aligned (%)
59.5
Duplicates removed (%)
5.0
Number of peaks
307 (qval < 1E-05)

mm9

Number of total reads
8540618
Reads aligned (%)
59.4
Duplicates removed (%)
5.2
Number of peaks
297 (qval < 1E-05)

Base call quality data from DBCLS SRA