SRX2488430
H3K27ac ChIP-seq of human HepG2 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

isolate
liver carcinoma cell line
age
15 years
biomaterial_provider
ATCC
sex
male
tissue
liver
cell_line
HEPG2
cell_subtype
liver carcinoma
cell_type
hepatocyte
culture_collection
ATCC:HB-8065
dev_stage
N/A
disease
hepatocellular carcinoma
ethnicity
Caucasian
karyotype
50 to 60
sample_type
immortalized cell line

Sequenced DNA Library

library_name
hs_HepG2_H3K27ac_veh
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiScanSQ

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
7850319
Reads aligned (%)
97.0
Duplicates removed (%)
7.0
Number of peaks
10943 (qval < 1E-05)

hg19

Number of total reads
7850319
Reads aligned (%)
96.5
Duplicates removed (%)
7.1
Number of peaks
10887 (qval < 1E-05)

Base call quality data from DBCLS SRA