Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Embryo
Cell type
Neuro-mesodermal progenitors
NA
NA

Attributes by original data submitter

Sample

source_name
T+ FACS sorted cells from caudal ends of T2J/2J embryos
strain
C57BL/6N
developmental stage
TS13

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
19237538
Reads aligned (%)
60.2
Duplicates removed (%)
21.1
Number of peaks
2613 (qval < 1E-05)

mm9

Number of total reads
19237538
Reads aligned (%)
60.1
Duplicates removed (%)
21.1
Number of peaks
2619 (qval < 1E-05)

Base call quality data from DBCLS SRA