SRX248440
GSM1091914: MCF7 E2 5min PolII rep; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Breast cancer cells
cell line
MCF7
time point
5 min
cell type
Pleural effusion
passages
14-17
chip antibody
Homemade Anti-Pol II Monoclonal

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
133896599
Reads aligned (%)
75.0
Duplicates removed (%)
37.2
Number of peaks
17023 (qval < 1E-05)

hg19

Number of total reads
133896599
Reads aligned (%)
74.4
Duplicates removed (%)
37.7
Number of peaks
17118 (qval < 1E-05)

Base call quality data from DBCLS SRA