SRX248286
GSM1090230: Nanog ChIP-Seq 1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Nanog

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse embryonic stem cells
cell type
Mouse embryonic stem cells
origin
Vanderbilt University
antibody
Nanog (Santa Cruz)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
115761967
Reads aligned (%)
68.5
Duplicates removed (%)
48.6
Number of peaks
121325 (qval < 1E-05)

mm9

Number of total reads
115761967
Reads aligned (%)
68.4
Duplicates removed (%)
48.7
Number of peaks
131850 (qval < 1E-05)

Base call quality data from DBCLS SRA