Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryo
Cell type
Sympathetic neurons
NA
NA

Attributes by original data submitter

Sample

source_name
sympathetic neurons
tissue
sympathetic neurons
Stage
E12.5-14.5

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
100-300bp chromatin fragments were obtained after sonication with indicated condition. Immunoprecipitated DNA-ISL1 complexes were captured by Isl1 antibody (Abcam, USA)-beads complex.Immunoprecipitated DNAs were obtained by extraction with phenol chloroform after incubated on metal bath under the condition of 65 ℃ over night. Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
46019232
Reads aligned (%)
94.6
Duplicates removed (%)
15.3
Number of peaks
1071 (qval < 1E-05)

mm9

Number of total reads
46019232
Reads aligned (%)
94.5
Duplicates removed (%)
15.4
Number of peaks
1083 (qval < 1E-05)

Base call quality data from DBCLS SRA