SRX247751
GSM1095383: Ubiquitin with alpha-Amanitin and Proteasome Inhibitor; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Embryonic fibroblast
Cell type
3T3-L1
Tissue
Embryo
Cell Type
Fibroblast

Attributes by original data submitter

Sample

source_name
3T3-L1 cells (ATCC #CL-173)
epitope
3FLAG
antibody
M2 (Sigma Aldrich)
molecule
3FLAG-ubiquitin
treatment
lactacystin and alpha-Amanitin

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
187964114
Reads aligned (%)
95.2
Duplicates removed (%)
65.3
Number of peaks
838 (qval < 1E-05)

mm9

Number of total reads
187964114
Reads aligned (%)
95.0
Duplicates removed (%)
65.3
Number of peaks
934 (qval < 1E-05)

Base call quality data from DBCLS SRA