SRX247302
GSM1094255: CEBPB Tg ChIP-seq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Cebpb

Cell type

Cell type Class
Epidermis
Cell type
Dermal fibroblasts
NA
NA

Attributes by original data submitter

Sample

source_name
CEBPB_Tg_ChIP-seq
cell type
Primary dermal fibroblasts
Sex
female
strain
FVB/N
chip antibody
CEBPb [CEBP B:(C-19): sc-150, lot:#I1010]
treatment
Thapsigargin treatment for 3 hrs

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
23292946
Reads aligned (%)
94.3
Duplicates removed (%)
34.3
Number of peaks
1622 (qval < 1E-05)

mm9

Number of total reads
23292946
Reads aligned (%)
94.1
Duplicates removed (%)
34.5
Number of peaks
1621 (qval < 1E-05)

Base call quality data from DBCLS SRA