SRX246873
GSM1089892: MmTKO Mbd3a; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells
cell type
embryonic stem cells
genotype
Dnmt1,Dnmt3a,Dnmt3b triple KO
background strain
mixed 129-C57Bl/6

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
107624315
Reads aligned (%)
57.8
Duplicates removed (%)
48.6
Number of peaks
678 (qval < 1E-05)

mm9

Number of total reads
107624315
Reads aligned (%)
57.6
Duplicates removed (%)
48.6
Number of peaks
769 (qval < 1E-05)

Base call quality data from DBCLS SRA