SRX246077
GSM1089629: CENP-A ChIP-seq [IMS13q cell line]; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
CENPA

Cell type

Cell type Class
Blood
Cell type
IMS13q
NA
NA

Attributes by original data submitter

Sample

GEO Accession
GSM1089629
cell type
Lymphoblast
chip antibody
CENP-A (Abcam, ab13939)
cell line
IMS13q

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
76635229
Reads aligned (%)
94.2
Duplicates removed (%)
60.1
Number of peaks
8287 (qval < 1E-05)

hg19

Number of total reads
76635229
Reads aligned (%)
84.5
Duplicates removed (%)
77.8
Number of peaks
443 (qval < 1E-05)

Base call quality data from DBCLS SRA