SRX245741
GSM1088664: Miz1 ChIPseq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZBTB17

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa cells, Miz1 ChIP
cell line
HeLa
chip antibody
anti-Miz (residues 637-803) antibody [non-commercial; lab-prepared]

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19125018
Reads aligned (%)
76.0
Duplicates removed (%)
2.8
Number of peaks
1416 (qval < 1E-05)

hg19

Number of total reads
19125018
Reads aligned (%)
75.5
Duplicates removed (%)
4.0
Number of peaks
1549 (qval < 1E-05)

Base call quality data from DBCLS SRA