Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Epidermis
Cell type
Skin epithelia
NA
NA

Attributes by original data submitter

Sample

source_name
Skin
Sex
female
strain
C57BL/6
cell type
adult skin epithelia
sort markers
Integrin A6+, B1+ SCa1+ CD34-
treatment
topical imiquimod for 6 days and harvested 30 days after treatment

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Cells were FACS sorted according to characteristics: sort markers, and Nuclei were extracted and genomic DNA was transposed per protocl outlined in doi:10.1038/nmeth.2694 Nextera DNA Library Preparation Kit

Sequencing Platform

instrument_model
Illumina HiSeq 4000

mm10

Number of total reads
38259158
Reads aligned (%)
91.6
Duplicates removed (%)
39.4
Number of peaks
54913 (qval < 1E-05)

mm9

Number of total reads
38259158
Reads aligned (%)
91.6
Duplicates removed (%)
39.4
Number of peaks
54848 (qval < 1E-05)

Base call quality data from DBCLS SRA