SRX2442332
GSM2439073: MYB KnockDown rep3; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
human erythroleukemic cell line
tissue
human erythroleukemic cell line
cell line
K-562
stably expressing
3xTY1
sirna
si2992

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Illumina Nextera Library prep kit (FC-121-1030)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
40394573
Reads aligned (%)
92.4
Duplicates removed (%)
58.1
Number of peaks
3521 (qval < 1E-05)

hg19

Number of total reads
40394573
Reads aligned (%)
92.1
Duplicates removed (%)
58.4
Number of peaks
3482 (qval < 1E-05)

Base call quality data from DBCLS SRA