SRX2442327
GSM2439068: siRNA Control rep1; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
human erythroleukemic cell line
tissue
human erythroleukemic cell line
cell line
K-562
stably expressing
3xTY1
sirna
siGENOME non-targeting siRNA

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Illumina Nextera Library prep kit (FC-121-1030)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
34808963
Reads aligned (%)
91.2
Duplicates removed (%)
70.3
Number of peaks
5019 (qval < 1E-05)

hg19

Number of total reads
34808963
Reads aligned (%)
90.9
Duplicates removed (%)
70.5
Number of peaks
4945 (qval < 1E-05)

Base call quality data from DBCLS SRA