SRX2440058
GSM2436776: GRHL2 KO EpiC H3K27Ac rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Pluripotent stem cell
Cell type
EpiSC
NA
NA

Attributes by original data submitter

Sample

source_name
epiblast cells
cell type
EpiCs
cell line of origin
V6.5 ESCs
chip antibody
H3K27Ac
treatment
-Lif -2i day 3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted using a standard ChIP protocol Library was constructed using a standard Illumina protocol ChIP-seq, ATAC-seq

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
24183920
Reads aligned (%)
97.1
Duplicates removed (%)
22.0
Number of peaks
7154 (qval < 1E-05)

mm9

Number of total reads
24183920
Reads aligned (%)
96.9
Duplicates removed (%)
22.1
Number of peaks
7133 (qval < 1E-05)

Base call quality data from DBCLS SRA