Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PAX5

Cell type

Cell type Class
Blood
Cell type
RAJI
Primary Tissue
Blood
Tissue Diagnosis
Malignant Lymphoma - Burkitts Type

Attributes by original data submitter

Sample

source_name
Burkitt lymphoma cell line
cell line
Raji
treatment
none
chip antibody
Pax-5 antibody (C-20)
chip antibody manufacturer
Santa Cruz

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
48728220
Reads aligned (%)
56.9
Duplicates removed (%)
31.6
Number of peaks
6812 (qval < 1E-05)

hg38

Number of total reads
48728220
Reads aligned (%)
58.5
Duplicates removed (%)
30.4
Number of peaks
6679 (qval < 1E-05)

Base call quality data from DBCLS SRA