Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Adipocyte
Cell type
White adipocytes
NA
NA

Attributes by original data submitter

Sample

source_name
iWAT
strain
129S1/SvlmJ
tissue
iWAT

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was isolated using phenol/chloroform extraction and NaCl/EtOH precipitated with 20 μg glycogen carrier ChIP-seq library was prepared for sequencing according to the amplification protocol from Illumina

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
11015467
Reads aligned (%)
89.4
Duplicates removed (%)
13.1
Number of peaks
15692 (qval < 1E-05)

mm9

Number of total reads
11015467
Reads aligned (%)
89.3
Duplicates removed (%)
13.2
Number of peaks
15676 (qval < 1E-05)

Base call quality data from DBCLS SRA