Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Adipocyte
Cell type
White adipocytes
NA
NA

Attributes by original data submitter

Sample

source_name
eWAT
strain
129S1/SvlmJ
tissue
eWAT

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was isolated using phenol/chloroform extraction and NaCl/EtOH precipitated with 20 μg glycogen carrier ChIP-seq library was prepared for sequencing according to the amplification protocol from Illumina

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
27927049
Reads aligned (%)
96.2
Duplicates removed (%)
72.9
Number of peaks
14431 (qval < 1E-05)

mm9

Number of total reads
27927049
Reads aligned (%)
96.1
Duplicates removed (%)
73.0
Number of peaks
14411 (qval < 1E-05)

Base call quality data from DBCLS SRA