Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Adipocyte
Cell type
White adipocytes
NA
NA

Attributes by original data submitter

Sample

source_name
eWAT
strain
C57BL/6J
tissue
eWAT

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was isolated using phenol/chloroform extraction and NaCl/EtOH precipitated with 20 μg glycogen carrier ChIP-seq library was prepared for sequencing according to the amplification protocol from Illumina

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
43389431
Reads aligned (%)
93.9
Duplicates removed (%)
75.7
Number of peaks
6118 (qval < 1E-05)

mm9

Number of total reads
43389431
Reads aligned (%)
93.8
Duplicates removed (%)
75.8
Number of peaks
6096 (qval < 1E-05)

Base call quality data from DBCLS SRA