SRX2436342
GSM2433338: CD24minusminus2; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
cell type
CML cell line

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Tagmentation was performed as previously described (Buenrostro et al., 2013) Purified DNA was barcoded using a single unique adapter (i5)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19508244
Reads aligned (%)
25.9
Duplicates removed (%)
20.0
Number of peaks
103 (qval < 1E-05)

hg19

Number of total reads
19508244
Reads aligned (%)
25.7
Duplicates removed (%)
20.3
Number of peaks
90 (qval < 1E-05)

Base call quality data from DBCLS SRA