SRX243629
GSM1084785: SNU216 TEAD4 ChIP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TEAD4

Cell type

Cell type Class
Digestive tract
Cell type
SNU-216
Primary Tissue
Stomach
Site of Extraction
Lymph Node
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
SNU216
cell line
SNU216
cell type
gastric cancer cell
chip antibody
TEAD4 (Abnova, H00007004-M01, 11105-5H3)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
31822901
Reads aligned (%)
57.8
Duplicates removed (%)
34.8
Number of peaks
16569 (qval < 1E-05)

hg38

Number of total reads
31822901
Reads aligned (%)
59.6
Duplicates removed (%)
33.4
Number of peaks
16756 (qval < 1E-05)

Base call quality data from DBCLS SRA