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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: TEAD4
wikigenes
PDBj
CellType: SNU-216
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX243629
GSM1084785: SNU216 TEAD4 ChIP; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
TEAD4
Cell type
Cell type Class
Digestive tract
Cell type
SNU-216
Primary Tissue
Stomach
Site of Extraction
Lymph Node
Tissue Diagnosis
Carcinoma
Attributes by original data submitter
Sample
source_name
SNU216
cell line
SNU216
cell type
gastric cancer cell
chip antibody
TEAD4 (Abnova, H00007004-M01, 11105-5H3)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
31822901
Reads aligned (%)
57.8
Duplicates removed (%)
34.8
Number of peaks
16569 (qval < 1E-05)
hg38
Number of total reads
31822901
Reads aligned (%)
59.6
Duplicates removed (%)
33.4
Number of peaks
16756 (qval < 1E-05)
Base call quality data from
DBCLS SRA