SRX243626
GSM1084782: MKN28 Input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
MKN-28
Primary Tissue
Stomach
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MKN28
cell line
MKN28
cell type
gastric cancer cell
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29501244
Reads aligned (%)
88.0
Duplicates removed (%)
6.1
Number of peaks
2175 (qval < 1E-05)

hg19

Number of total reads
29501244
Reads aligned (%)
86.4
Duplicates removed (%)
8.9
Number of peaks
1509 (qval < 1E-05)

Base call quality data from DBCLS SRA