Antigen

Antigen Class

TFs and others

Antigen

Ctcf

Cell type

Cell type Class

Breast

Cell type

Mammary glands

NA

NA

Sample

source_name

delC-L1-CTCF

strain

C57BL/6

tissue

Mammary gland

state

day one of lactation

genotype

CTCF-delC

chip antibody

CTCF (Abcam ab70303 / Millipore 07-729)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Libraries for sequencing were prepared using standard Illumina protocols.

Sequencing Platform

instrument_model

Illumina HiSeq 2500

mm10

Number of total reads

12682614

Reads aligned (%)

86.9

Duplicates removed (%)

18.1

Number of peaks

9157 (qval < 1E-05)

mm9

Number of total reads

12682614

Reads aligned (%)

86.8

Duplicates removed (%)

18.3

Number of peaks

9213 (qval < 1E-05)