Antigen

Antigen Class

TFs and others

Antigen

Smc1a

Cell type

Cell type Class

Breast

Cell type

Mammary glands

NA

NA

Sample

source_name

delA-L1-SMC1

strain

C57BL/6

tissue

Mammary gland

state

day one of lactation

genotype

CTCF-delA

chip antibody

SMC1 (Bethyl, A300-055A)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Libraries for sequencing were prepared using standard Illumina protocols.

Sequencing Platform

instrument_model

Illumina HiSeq 2500

mm10

Number of total reads

13662773

Reads aligned (%)

93.6

Duplicates removed (%)

24.9

Number of peaks

15946 (qval < 1E-05)

mm9

Number of total reads

13662773

Reads aligned (%)

93.5

Duplicates removed (%)

25.0

Number of peaks

15964 (qval < 1E-05)