SRX2436116
GSM2433088: ChIP-Seq-delA-L1-GR-rep2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Nr3c1

Cell type

Cell type Class
Breast
Cell type
Mammary glands
NA
NA

Attributes by original data submitter

Sample

source_name
delA-L1-GR
strain
C57BL/6
tissue
Mammary gland
state
day one of lactation
genotype
CTCF-delA
chip antibody
GR (Thermo Scientific, PA1-511A)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries for sequencing were prepared using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
19496637
Reads aligned (%)
96.8
Duplicates removed (%)
12.8
Number of peaks
1857 (qval < 1E-05)

mm9

Number of total reads
19496637
Reads aligned (%)
96.6
Duplicates removed (%)
12.8
Number of peaks
1876 (qval < 1E-05)

Base call quality data from DBCLS SRA