SRX243598
GSM1084282: wt H3K4me3; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
Dnmt1+/+_MEFs_H3K4me3
strain/cell line background
PMID 17311920
cell type
Mouse embryonic fibroblasts (MEFs)
genotype/variation
wild type; Dnmt1+/+
chip antibody
H3K4me3
chip antibody vendor
Millipore

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
37731678
Reads aligned (%)
98.5
Duplicates removed (%)
57.0
Number of peaks
30451 (qval < 1E-05)

mm9

Number of total reads
37731678
Reads aligned (%)
98.3
Duplicates removed (%)
57.0
Number of peaks
30443 (qval < 1E-05)

Base call quality data from DBCLS SRA