Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Cell line
Cell type
S2R+
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
ChIP Seq of Ser2P Pol II in Mago Knockdown condition
chip antibody
anti Ser2P (Abcam, catalog# Ab5095, lot# GR154006)
cell line
S2R+ Cells
cell type
Embryonic

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was recovered after reverse crosslinking and phenol chloroform extraction. After precipitating and pelleting, DNA was dissolved in 30 _l of TE After checking enrichment the recovered DNA was converted into libraries using NebNext Ultra DNA library preperation kit, following manufacturer's protocol. Custom adaptors with front tag were used in the protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

dm6

Number of total reads
22906103
Reads aligned (%)
96.5
Duplicates removed (%)
63.7
Number of peaks
3643 (qval < 1E-05)

dm3

Number of total reads
22906103
Reads aligned (%)
96.5
Duplicates removed (%)
62.5
Number of peaks
5704 (qval < 1E-05)

Base call quality data from DBCLS SRA