Antigen

Antigen Class

TFs and others

Antigen

SMC3

Cell type

Cell type Class

Lung

Cell type

IMR-90

Primary Tissue

Lung

Tissue Diagnosis

Normal

Sample

dev stage

fetal

cell type

IMR-90

sex

female

sample type

primary cell

donor ID

ENCDO000AAX

age

16 week

health state

unknown

lab

Michael Snyder, Stanford

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/2abad4f0-cd36-43de-8cd8-9958aa7fde39/@@download/attachment/ChIP-Seq_protocol_Snyder_lab_GAIIx.pdf

Sequencing Platform

instrument_model

Illumina Genome Analyzer IIx

hg38

Number of total reads

23440269

Reads aligned (%)

88.1

Duplicates removed (%)

17.2

Number of peaks

21186 (qval < 1E-05)

hg19

Number of total reads

23440269

Reads aligned (%)

87.5

Duplicates removed (%)

18.3

Number of peaks

21302 (qval < 1E-05)