Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Digestive tract

Cell type

Intestines

MeSH Description

The section of the alimentary canal from the STOMACH to the ANAL CANAL. It includes the LARGE INTESTINE and SMALL INTESTINE.

Sample

dev stage

postnatal

donor ID

ENCDO956IXV

tissue

intestine

age

0 day

sex

not collected

lab

Richard Myers, HAIB

sample type

tissue

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

growth protocol: https://www.encodeproject.org/documents/e22e9796-e93c-4c7e-b591-a0eb87db5a36/@@download/attachment/MyersLab_Tissue_ChIP_11_6_14.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

26151836

Reads aligned (%)

97.8

Duplicates removed (%)

8.0

Number of peaks

493 (qval < 1E-05)

mm9

Number of total reads

26151836

Reads aligned (%)

97.6

Duplicates removed (%)

8.1

Number of peaks

501 (qval < 1E-05)