Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

dev stage
embryonic
donor ID
ENCDO000ABF
age
unknown
sex
female
lab
Michael Snyder, Stanford
health state
unknown
sample type
immortalized cell line
cell line
HEK293

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
31716835
Reads aligned (%)
97.9
Duplicates removed (%)
1.6
Number of peaks
960 (qval < 1E-05)

hg19

Number of total reads
31716835
Reads aligned (%)
97.4
Duplicates removed (%)
1.7
Number of peaks
717 (qval < 1E-05)

Base call quality data from DBCLS SRA