Antigen

Antigen Class

TFs and others

Antigen

ZNF414

Cell type

Cell type Class

Kidney

Cell type

293

Primary Tissue

Kidney

Tissue Diagnosis

Normal

Sample

age

unknown

dev_stage

embryonic

sex

female

health state

unknown

lab

Michael Snyder, Stanford

sample_type

immortalized cell line

donor ID

ENCDO000ABF

cell line

HEK293

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/0994a79b-44ae-49ef-a44c-6b2ebf85a230/@@download/attachment/ChIP-Seq%20Biorupter%20Pico%20BravoTruSeq%20protocol%20for%20Syapse%20%28modified%20for%20HEK293%20GFP-ZNF%29.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

56666550

Reads aligned (%)

97.8

Duplicates removed (%)

15.8

Number of peaks

8799 (qval < 1E-05)

hg19

Number of total reads

56666550

Reads aligned (%)

97.3

Duplicates removed (%)

15.8

Number of peaks

8318 (qval < 1E-05)