Antigen

Antigen Class

Histone

Antigen

H3K9me3

Cell type

Cell type Class

Embryo

Cell type

Facial prominence

NA

NA

Sample

tissue

embryonic facial prominence

age

11.5 day

donor ID

ENCDO956IXV

dev stage

embryonic

sample type

tissue

sex

pooled male and female

health state

healthy

lab

Len Pennacchio, LBNL

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/89795b31-e65a-42ca-9d7b-d75196f6f4b3/@@download/attachment/Ren%20Lab%20ENCODE%20Chromatin%20Immunoprecipitation%20Protocol_V2.pdf general protocol: https://www.encodeproject.org/documents/4f73fbc3-956e-47ae-aa2d-41a7df552c81/@@download/attachment/Ren_ChIP_Library_Preparation_v060614.pdf general protocol: https://www.encodeproject.org/documents/3125496b-c833-4414-bf5f-84dd633eb30d/@@download/attachment/Ren_Tissue_Fixation_and_Sonication_v060614.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

54414138

Reads aligned (%)

94.3

Duplicates removed (%)

32.4

Number of peaks

974 (qval < 1E-05)

mm9

Number of total reads

54414138

Reads aligned (%)

93.7

Duplicates removed (%)

32.2

Number of peaks

1171 (qval < 1E-05)