Antigen

Antigen Class

TFs and others

Antigen

SIN3A

Cell type

Cell type Class

Lung

Cell type

A549

Primary Tissue

Lung

Tissue Diagnosis

Carcinoma

Sample

dev stage

adult

donor ID

ENCDO000AAZ

age

58 year

sex

male

lab

Michael Snyder, Stanford

sample type

immortalized cell line

cell line

A549

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/d6c4ad11-71ce-4cf4-97f1-7f635d2de09b/@@download/attachment/ChIP-Seq_protocol_Snyder_lab_HiSeq.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

33620433

Reads aligned (%)

97.3

Duplicates removed (%)

12.5

Number of peaks

16674 (qval < 1E-05)

hg19

Number of total reads

33620433

Reads aligned (%)

96.4

Duplicates removed (%)

12.7

Number of peaks

15526 (qval < 1E-05)