Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic liver
NA
NA

Attributes by original data submitter

Sample

dev stage
embryonic
donor ID
ENCDO956IXV
tissue
liver
age
14.5 day
sex
pooled male and female
lab
Richard Myers, HAIB
sample type
tissue

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
30412537
Reads aligned (%)
95.6
Duplicates removed (%)
9.7
Number of peaks
4512 (qval < 1E-05)

mm9

Number of total reads
30412537
Reads aligned (%)
95.4
Duplicates removed (%)
9.7
Number of peaks
4424 (qval < 1E-05)

Base call quality data from DBCLS SRA