Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Neural

Cell type

Brain

MeSH Description

The part of CENTRAL NERVOUS SYSTEM that is contained within the skull (CRANIUM). Arising from the NEURAL TUBE, the embryonic brain is comprised of three major parts including PROSENCEPHALON (the forebrain); MESENCEPHALON (the midbrain); and RHOMBENCEPHALON (the hindbrain). The developed brain consists of CEREBRUM; CEREBELLUM; and other structures in the BRAIN STEM.

Sample

dev stage

postnatal

donor ID

ENCDO956IXV

tissue

forebrain

age

0 day

sex

not collected

lab

Richard Myers, HAIB

sample type

tissue

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

growth protocol: https://www.encodeproject.org/documents/e22e9796-e93c-4c7e-b591-a0eb87db5a36/@@download/attachment/MyersLab_Tissue_ChIP_11_6_14.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

23014423

Reads aligned (%)

97.6

Duplicates removed (%)

6.2

Number of peaks

407 (qval < 1E-05)

mm9

Number of total reads

23014423

Reads aligned (%)

97.5

Duplicates removed (%)

6.3

Number of peaks

391 (qval < 1E-05)