Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
Neutrophils
MeSH Description
Immature neutrophils.

Attributes by original data submitter

Sample

source_name
active disease, treated
cell type
neutrophils
disease state
Juvenile Idiopathic Arthritis

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Peripheral blood mononuclear cells (PBMC) were separated from neutrophils and red blood cells by density-gradient centrifugation. Red cells were removed from neutrophils by hypotonic lysis. Neutrophils were crosslinked using 1% formaldehyde in 10 ml PBS for 10 min at room temperature. Crosslinking was quenched by adding 1× glycine. ChIP was performed following the protocol (Cell Signaling Technologies, Inc.). DNA-sequencing was conducted using the Illumina HiSeq 2500.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
34851447
Reads aligned (%)
97.8
Duplicates removed (%)
4.0
Number of peaks
871 (qval < 1E-05)

hg19

Number of total reads
34851447
Reads aligned (%)
96.6
Duplicates removed (%)
5.4
Number of peaks
823 (qval < 1E-05)

Base call quality data from DBCLS SRA