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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K18ac
wikigenes
PDBj
CellType: B-cell lymphoproliferative disorders
ATCC
MeSH
RIKEN BRC
SRX2420066
GSM2427870: LEU B.H3K18ac.R1; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K18ac
Cell type
Cell type Class
Blood
Cell type
B-cell lymphoproliferative disorders
NA
NA
Attributes by original data submitter
Sample
source_name
LPD bulk tissue
strain
C57BL/6
genotype
Crebbp-/- (CBPfl/fl:Mx-Cre+)
cell type
LPD bulk tissue
chip antibody
anti-H3K18ac #ab1191, Abcam
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Bulk splenocytes ChIP-Seq libraries were prepared for sequencing using standard Illumina protocols
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
60969128
Reads aligned (%)
90.9
Duplicates removed (%)
15.5
Number of peaks
37329 (qval < 1E-05)
mm9
Number of total reads
60969128
Reads aligned (%)
90.8
Duplicates removed (%)
15.5
Number of peaks
37357 (qval < 1E-05)
Base call quality data from
DBCLS SRA