SRX2403345
NR H3K4me3 ChIP rep3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

isolate
cell line
age
not applicable
biomaterial_provider
not applicable
sex
female
tissue
not applicable
cell_line
H9 (WA09)
cell_type
neural stem cells

Sequenced DNA Library

library_name
H3K4me3_3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 550

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
13352541
Reads aligned (%)
93.5
Duplicates removed (%)
7.3
Number of peaks
3494 (qval < 1E-05)

hg19

Number of total reads
13352541
Reads aligned (%)
92.7
Duplicates removed (%)
8.5
Number of peaks
3624 (qval < 1E-05)

Base call quality data from DBCLS SRA